Advanced

This section is for users who already run the standard cardio-tensor pipeline and want more detailed information about the analysis tools, Python usage, and advanced execution workflows.

Pages:

• Python API: Use cardiotensor as a Python library for structure tensor analysis, angle computation, tractography, and plotting.
• Transmural Analysis: Extract transmural profiles from angle and FA maps with cardio-analysis.
• Streamlines: Generate and visualize 3D streamlines with cardio-generate-streamlines and cardio-visualize-streamlines.
• SLURM Launcher: Submit chunked cardio-tensor jobs on HPC clusters.

See also:

• Configuration file
• CLI commands
• Example workflow